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After assessing the role of the PIDDosome in liver development (PMID: 31983631) and hepatocellular carcinoma (PMID: 33225610), a team involving former PhD student Valentina, Felix, Institute head Andreas Villunger and hepatologist Thomas Reiberger from Vienna has now compiled a Review Article that summarizes the current knowledge about polyploidy control in the healthy as well as the diseased liver.

We are happy to announce that Joel Riley from the Beatson Institute for Cancer Research in Glasgow decided to join the team as a new Group Leader and Tenure Track Professor. Joel will start by the end of the year and will head the "Cell Death & Inflammation" Lab. Welcome, Joel!

Congratulations! For his work on the PIDDosome, a protein complex that becomes activated upon polyploidization, Felix Eichin has secured one of the prestigious DOC fellowships from the Austrian Academy of Sciences. In the next years, he will investigate how the autoprocessing of PIDD, a key component and name giver of the complex, affects PIDDosome function.

Joined lab retreat 2021 in the Tyrolean Alps


Marina Leone has successfully applied for funding within the FWF Meintner program. In the next two years she will investigate how the PIDDosome, a protein complex that has been described by our group as the key sensor for polyploidization events, regulates heart development. Polyploidization and its control are of particular interest here, as the heart is a post-mitotic organ full of terminally differentiated and polyploid cardiomyocytes. This limits tissue regeneration, e.g. upon myocardial infarction, and it is tempting to speculate that manipulating PIDDosome function may beneficial in this context. Congrats, Marina!

For her PhD work on the PIDDosome in hepatocyte development, regeneration and cancer (see below), Valentina has received the prestigious Award of Excellence sponsored by the Austrian state. Each year, this award honors the best 40 dissertations in the country. On top of it, she also got an EMBO fellowship for her Postdoc studies that she has recently started in the United States. Well done, Valentina!

Polyploidization is a hallmark of cancer cells but also occurs during normal development in several tissues, e.g. in the liver. Loss of the regulator of hepatocyte ploidy, the PIDDosome, drastically increases polyploidy, but it has been unclear to what extent this affects  tumorigenesis. Here, Valentina showed that PIDDosome deficiency reduced tumor number and burden, despite the inability to activate p53 in polyploid cells. Thus, the PIDDosome may be a therapeutic target to manipulate hepatocyte polyploidization in order to prevent and/or treat hepatocellular carcinoma.

Who is your pick for the "Ugly Christmas Sweater" contest?

Lab retreat 2020, tyrolean style

MiRNAs are generated from long primary transcripts in which local stem-loop structures are recognized and cut by the Microprocessor. However, it is still unclear how exactly the enzymatic machinery distinguishes an authentic miRNA hairpin from the thousands of similar folds found in RNA. Here, Sebastian and his team describe a SAFB2- and ERH-dependent mechanism they refer to as "cluster assistance", in which a suboptimal primary miRNA fold is properly processed only when expressed together with a standard miRNA on the same transcript. The features that define a primary miRNA are thus not only encoded in the stem-loop itself, but also by the larger sequence context.

Microtubule targeting agents are used to treat a variety of cancers. These drugs can cause mitotic arrest during which the pro-survival protein MCL1 is targeted for degradation by the pro-apoptotic protein NOXA.  This slow degradation of MCL1 is usually assumed to act as a timer defining cell survival. We now identified the E3 Ubiquitin ligase MARCH5 as a factor that controls the stability of the MCL1/NOXA complexes during mitotic arrest with dramatic effects on the survival of the cells during and after mitotic arrest.

E2Fs to restrict proliferation of polyploid hepatocytes during liver development and regeneration.

The PIDDosome multiprotein complex activates p53 in response to extra centrosomes as seen in polyploid cells. Polyploidization often occurs in cancer but is also part of normal organ development in the liver. This process of failed cytokinesis is induced by E2F transcription factors. Here, we identified the PIDDosome as essential player under transcriptional control by E2Fs to restrict proliferation of proliferation of polyploid hepatocytes during liver development and regeneration. As such, the PIDDosome is a potential therapeutic target to accelerate the regeneration process.

The Labi Lab is hiring

Recently we could secure an FWF stand alone and a TWF grant. If you are excited about the non-coding genome, how small non-coding RNAs (microRNAs) fuel cancer development and how this knowledge can be exploited for disease prevention or treatment JOIN OUR TEAM. We are currently recruiting PhD and MSc students.

Email: verena.labi@i-med.ac.at

Entscheidung über Leben und Tod

In collaboration with Klaus Rajewsky from the MDC Berlin, Verena and her team have identified a mechanism that controls the cellular levels of the BIM protein. The function of BIM in our cells is induction of apoptosis (programmed cell death). Small non-coding RNAs encoded by the miR-17-92 cluster gene can directly bind to the BIM mRNA and dampen the production of the BIM protein. Although both, BIM and the miR-17-92 miRNAs are co-expressed in most cells of our body, this mechanism of cell death inhibition is restricted to specific tissues. In B lymphocytes of the immune system it prevents stress-induced cellular suicide. During embryonic development it promotes normal lung maturation. Hence, this mechanism of apoptosis control is critical for life after birth.

Checkpoint kinase 1 is essential for hematopoiesis

Checkpoint kinase 1 (CHK1) has developed into a promising drug target since tumor cells often depend on CHK1 function for survival. Here, Fabian and his colleagues describe a previously unrecognized role for CHK1 in establishing and maintaining hematopoiesis.

TET enzymes control antibody production and shape the mutational landscape in germinal centre B cells

Ten‐eleven‐translocation (TET) enzymes promote gene expression by catalyzing the oxidation of 5‐methylcytosine in DNA. In this publication that has recently been selected as Editor's Choice we show that TET function is vital for humoral immunity. TET activity guides the transition of germinal center B cells to antibody‐secreting plasma cells, and promotes antibody isotype switching. Loss of TET function favors C‐to‐T and G‐to‐A mutagenesis during somatic hypermutation, a finding of potential significance for the etiology of B‐cell lymphomas and other tumor entities.

Checkpoint kinase 1 regulates humoral immunity

How GC B cells exert control over the DNA damage response while introducing mutations in their antibody genes is poorly understood. Here, Verena and here team show that the DNA damage response regulator Checkpoint kinase 1 (CHK1) is essential for GC B cell survival. In particular, they demonstrate that CHK1 inhibition or loss of one Chk1 allele impairs the survival of class-switched cells and curbs the amplitude of antibody production.

Poster Prize for Gerlinde

On the recent 33rd Genes & Cancer Annual Meeting 2019 in Cambridge (UK), Gerlinde went all out and won the Poster Price sponsored by the FEBSJournal. Congratulations! This is pushing her even further to study the BCL-2 protein family in mitotic cell death & the maintenance of genomic stability.